Hey @armaanhammer,
I think you’ll need to redefine your peripheral pin declaration map. You can see that for your variant the PB_13 and PB_15 are not associated with the timer TIM1. You can go to your variant file in the package stm32duino. And change PeripheralPins.c file or include this map in your arduino code with undocumented right configuration.
#ifdef HAL_TIM_MODULE_ENABLED
WEAK const PinMap PinMap_PWM[] = {
{PA_0, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 1, 0)}, // TIM2_CH1
{PA_1, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 2, 0)}, // TIM2_CH2
// {PA_1, TIM15, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM15, 1, 1)}, // TIM15_CH1N
// {PA_2, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 3, 0)}, // TIM2_CH3
// {PA_2, TIM15, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM15, 1, 0)}, // TIM15_CH1
// {PA_3, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 4, 0)}, // TIM2_CH4
// {PA_3, TIM15, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM15, 2, 0)}, // TIM15_CH2
{PA_5, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 1, 0)}, // TIM2_CH1
{PA_6, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 1, 0)}, // TIM3_CH1
// {PA_6, TIM16, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM16, 1, 0)}, // TIM16_CH1
// {PA_7, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 1, 1)}, // TIM1_CH1N
{PA_7, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 2, 0)}, // TIM3_CH2
{PA_8, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 1, 0)}, // TIM1_CH1
{PA_9, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 2, 0)}, // TIM1_CH2
{PA_10, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 3, 0)}, // TIM1_CH3
{PA_11, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 4, 0)}, // TIM1_CH4
{PA_15, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 1, 0)}, // TIM2_CH1
// {PB_0, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 2, 1)}, // TIM1_CH2N
{PB_0, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 3, 0)}, // TIM3_CH3
// {PB_1, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 3, 1)}, // TIM1_CH3N
{PB_1, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 4, 0)}, // TIM3_CH4
{PB_3, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 2, 0)}, // TIM2_CH2
{PB_4, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 1, 0)}, // TIM3_CH1
{PB_5, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 2, 0)}, // TIM3_CH2
{PB_6, TIM16, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM16, 1, 1)}, // TIM16_CH1N
{PB_8, TIM16, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM16, 1, 0)}, // TIM16_CH1
{PB_10, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 3, 0)}, // TIM2_CH3
{PB_11, TIM2, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM2, 4, 0)}, // TIM2_CH4
// {PB_13, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 1, 1)}, // TIM1_CH1N
{PB_13, TIM15, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM15, 1, 1)}, // TIM15_CH1N
{PB_14, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 2, 1)}, // TIM1_CH2N
// {PB_14, TIM15, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM15, 1, 0)}, // TIM15_CH1
// {PB_15, TIM1, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF1_TIM1, 3, 1)}, // TIM1_CH3N
{PB_15, TIM15, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF14_TIM15, 2, 0)}, // TIM15_CH2
{PC_6, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 1, 0)}, // TIM3_CH1
{PC_7, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 2, 0)}, // TIM3_CH2
{PC_8, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 3, 0)}, // TIM3_CH3
{PC_9, TIM3, STM_PIN_DATA_EXT(STM_MODE_AF_PP, GPIO_PULLUP, GPIO_AF2_TIM3, 4, 0)}, // TIM3_CH4
{NC, NP, 0}
};
#endif